Multiobjective Sequence Alignment
Step 1 - Sequences input
Step 2 - Score function
Step 3 - Alignment options
Step 4 - Submit
Step 1 - Sequences input (size < 2000)
FASTA format
Sequence 1
sample
Sequence 2
sample
Step 2 - Score function
Choose a substitution score matrix
-
BLOSUM75
BLOSUM85
BLOSUM80
BLOSUM62
PAM250
PAM100
-
DNA Similarity.dna
or
Upload substitution score matrix
Step 3 - Sequence alignment options
Traceback (display alignments)
Use pruning
Choose number of bounds
Step 4 - Submit
Send results to e-mail